Joint EndGame Publications

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Publications by each Group/Investigator

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• Gonçalo Abecasis, Center for Statistical Genetics, University of Michigan.
• Andrew Clark, Department of Molecular Biology and Genetics, Cornell University
• Nancy Cox, Section of Genetic Medicine, Department of Medicine, University of Chicago.
• Mark Daly, Whitehead Institute for Biomedical Research.
  • Diabetes Genetics Initiative of Broad Institute of Harvard and MIT, Lund University, and Novartis Institutes of BioMedical Research (2007) Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science. 2007 Jun 1;316(5829):1331-6.
  • S. Purcell, B. Neale, K. Todd-Brown, L. Thomas, M. A. R. Ferreira, D. Bender, J. Maller, P. Sklar, P. I. W. de Bakker, M. J. Daly, and P. C. Sham (2007) PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. Am J Hum Genet, 81:559-575.
• Peter Donnelly, Department of Statistics, University of Oxford.
  • * The Wellcome Trust Case Control Consortium (2007) Genomewide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447;661-78.
  • J. Marchini, B. Howie, S. Myers, G. McVean and P. Donnelly (2007) A new multipoint method for genome-wide association studies via imputation of genotypes. Nature Genetics (in press)
• Charles Kooperberg, Biostatistics, Public Health Sciences Division, Fred Hutchinson Cancer Research Center.
• Jeffrey O'Connell, Department of Medicine, University of Maryland.
• David Reich, Department of Genetics, Harvard Medical School, Broad Institute of Harvard and MIT.
• Dietrich A. Stephan (PI), David W. Craig, John V. Pearson, Neurogenomics Division, Translational Genomics Research Institute.
  • * Papassotiropoulos A, Stephan DA, Huentelman MJ, Hoerndli FJ, Craig DW, Pearson JV, Huynh KD, Brunner F, Corneveaux J, Osborne D, Wollmer MA, Aerni A, Coluccia D, Hanggi J, Mondadori CR, Buchmann A, Reiman EM, Caselli RJ, Henke K, de Quervain DJ (2006) Common Kibra alleles are associated with human memory performance. Science 314:475-478
  • * Pearson JV, Huentelman MJ, Halperin RF, Tembe WD, Melquist S, Homer N, Brun M, Szelinger S, Coon KD, Zismann VL, Webster JA, Beach T, Sando SB, Aasly JO, Heun R, Jessen F, Kolsch H, Tsolaki M, Daniilidou M, Reiman EM, Papassotiropoulos A, Hutton ML, Stephan DA, Craig DW (2007) Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies. Am J Hum Genet 80:126-139
  • * Hanson RL, Craig DW, Millis MP, Yeatts KA, Kobes S, Pearson JV, Lee AM, Knowler WC, Nelson RG, Wolford JK (2007) Identification of PVT1 as a Candidate Gene for End-Stage Renal Disease in Type 2 Diabetes Using a Pooling-Based Genome-Wide Single Nucleotide Polymorphism Association Study. Diabetes 56:975-983
  • * Hua J, Craig DW, Brun M, Webster J, Zismann V, Tembe W, Joshipura K, Huentelman MJ, Dougherty ER, Stephan DA (2007) SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays. Bioinformatics 23:57-63
  • * Melquist S, Craig DW, Huentelman MJ, Crook R, Pearson JV, Baker M, Zismann VL, et al. (2007) Identification of a novel risk locus for progressive supranuclear palsy by a pooled genomewide scan of 500,288 single-nucleotide polymorphisms. Am J Hum Genet 80:769-778
  • * Coon KD, Myers AJ, Craig DW, Webster JA, Pearson JV, Lince DH, Zismann VL, Beach TG, Leung D, Bryden L, Halperin RF, Marlowe L, Kaleem M, Walker DG, Ravid R, Heward CB, Rogers J, Papassotiropoulos A, Reiman EM, Hardy J, Stephan DA (2007) A high-density whole-genome association study reveals that APOE is the major susceptibility gene for sporadic late-onset Alzheimer's disease. J Clin Psychiatry 68:613-618
• Matthew Stephens, Departments of Statistics and Human Genetics, University of Chicago.
  • * Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genet. 2007 3(7).
• Duncan Thomas, Biostatistics Division, Keck School of Medicine, University of Southern California.
  • Lewinger JP, Conti DV, Baurley JW, Triche T, Thomas DC. Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. Genet Epidemiol 2007:in press.